PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00041050001
Common NameGSBRNA2T00041050001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 413aa    MW: 47503.2 Da    PI: 7.3301
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00041050001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.21.2e-07428126
                         --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                         ykt+lC  + ++G+C+  ++C+FaHg
  GSBRNA2T00041050001  4 YKTKLCILYEKNGHCSK-PNCTFAHG 28
                         9****************.*******9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.2E-11234IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.41E-6233IPR000571Zinc finger, CCCH-type
SMARTSM003560.002329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.136330IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-5428IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MSLYKTKLCI LYEKNGHCSK PNCTFAHGVD DLRLPGESSS FRGRRHNLDG DLRDKLGRHF  60
SPERRPSLER SGRRVQRFNG HENPRSFEKR RDVDYRENRR FDERSDYAGG LKAGSRIEAR  120
ERDERNKFLG YNNVLEEQLK DVELDVKMLT DNKLRLEAAV ERKAREADSL TSKIHELRNQ  180
LDREKEECKR ITSSTKKFVK ESEARLQKLG TQLSTYLLGN EGNDRETDIE IVSDEEKNGR  240
NLRSTSDLQN ELHNTSSSVS RKRHYVEQQY TTKESVQDAL RGRGEEDKLE NGKSPPSRWN  300
RVSSKSFSEE ESRVRNEEDA MNKSSSKEDT WKRRRLSSGT SSSNKVMSST SMAARVSDEV  360
AEFDEENTRA AKGSPLISLP PPPPFRDAHF HGDEEEEVDV NEQRKADDVD SV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1331335KRRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.141150.0seed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009109318.10.0PREDICTED: zinc finger CCCH domain-containing protein 40
SwissprotQ93XW71e-176C3H40_ARATH; Zinc finger CCCH domain-containing protein 40
TrEMBLA0A078JCR40.0A0A078JCR4_BRANA; BnaCnng43600D protein
STRINGBra023860.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100692127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.11e-169C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]